Update analyize_discovery.py
✅ New Features Graphical file selectors for both: Choosing the discovery output file Choosing the name and location of the analysis output file Output saved to a text file formatted for easy copy/paste into Excel Tab-separated values in the summary for compatibility with Excel columns Modality breakdown + exam statistics in one concise report 📝 How to Use It Save the code below as dicom_analysis_tool.py. Run it (python dicom_analysis_tool.py or double-click if .py is registered). Click the button to: Select the discovery results .txt file. Specify the output .txt destination. It will create a text summary that can be easily opened in Excel (tab-delimited).
This commit is contained in:
@@ -1,27 +1,35 @@
|
||||
import tkinter as tk
|
||||
from tkinter import filedialog, ttk
|
||||
from tkinter import filedialog, simpledialog
|
||||
import pandas as pd
|
||||
import os
|
||||
|
||||
def load_and_analyze_file():
|
||||
file_path = filedialog.askopenfilename(title="Select DICOM Discovery Output File", filetypes=[("Text Files", "*.txt")])
|
||||
if not file_path:
|
||||
def normalize_modalities(val):
|
||||
if val.startswith("[") and val.endswith("]"):
|
||||
try:
|
||||
return ", ".join(eval(val))
|
||||
except:
|
||||
return val
|
||||
return val
|
||||
|
||||
def analyze_and_save():
|
||||
input_path = filedialog.askopenfilename(
|
||||
title="Select DICOM Discovery Output File",
|
||||
filetypes=[("Text Files", "*.txt")]
|
||||
)
|
||||
if not input_path:
|
||||
return
|
||||
|
||||
df = pd.read_csv(file_path, delimiter='|', dtype=str).fillna('')
|
||||
|
||||
# Normalize modalities to upper case and flatten list-like strings
|
||||
def normalize_modalities(val):
|
||||
if val.startswith("[") and val.endswith("]"):
|
||||
try:
|
||||
return ", ".join(eval(val))
|
||||
except:
|
||||
return val
|
||||
return val
|
||||
output_path = filedialog.asksaveasfilename(
|
||||
title="Save Analysis Output As",
|
||||
defaultextension=".txt",
|
||||
filetypes=[("Text Files", "*.txt")]
|
||||
)
|
||||
if not output_path:
|
||||
return
|
||||
|
||||
df = pd.read_csv(input_path, delimiter='|', dtype=str).fillna('')
|
||||
df['ModalitiesInStudy'] = df['ModalitiesInStudy'].apply(normalize_modalities)
|
||||
|
||||
# Prepare metrics
|
||||
stats = {
|
||||
"Distinct StudyInstanceUIDs": df['StudyInstanceUID'].nunique(),
|
||||
"Distinct AccessionNumbers": df['AccessionNumber'].nunique(),
|
||||
@@ -38,9 +46,9 @@ def load_and_analyze_file():
|
||||
"*TEST* in PatientName": df['PatientName'].str.contains('TEST', case=False, na=False).sum()
|
||||
}
|
||||
|
||||
# Modality breakdown
|
||||
modality_counts = {
|
||||
"CR": 0, "DX": 0, "CT": 0, "MR": 0, "NM": 0, "US": 0, "XA": 0, "PR": 0, "SC": 0, "OT": 0, "Other": 0
|
||||
"CR": 0, "DX": 0, "CT": 0, "MR": 0, "NM": 0, "US": 0,
|
||||
"XA": 0, "PR": 0, "SC": 0, "OT": 0, "Other": 0
|
||||
}
|
||||
|
||||
for val in df['ModalitiesInStudy']:
|
||||
@@ -50,30 +58,26 @@ def load_and_analyze_file():
|
||||
else:
|
||||
modality_counts["Other"] += 1
|
||||
|
||||
# Display results
|
||||
output_window = tk.Toplevel(root)
|
||||
output_window.title("DICOM Discovery Analysis")
|
||||
with open(output_path, 'w') as f:
|
||||
f.write("DICOM Discovery Analysis Summary\n")
|
||||
f.write("="*40 + "\n\n")
|
||||
for key, value in stats.items():
|
||||
f.write(f"{key}\t{value}\n")
|
||||
f.write("\nModality Breakdown\n")
|
||||
f.write("-"*40 + "\n")
|
||||
for modality, count in modality_counts.items():
|
||||
f.write(f"{modality}\t{count}\n")
|
||||
|
||||
row = 0
|
||||
for key, val in stats.items():
|
||||
tk.Label(output_window, text=f"{key}:").grid(row=row, column=0, sticky='w', padx=5, pady=2)
|
||||
tk.Label(output_window, text=f"{val}").grid(row=row, column=1, sticky='w', padx=5, pady=2)
|
||||
row += 1
|
||||
tk.messagebox.showinfo("Analysis Complete", f"Analysis saved to:\n{output_path}")
|
||||
|
||||
tk.Label(output_window, text="Modality Breakdown:").grid(row=row, column=0, sticky='w', padx=5, pady=10)
|
||||
row += 1
|
||||
for modality, count in modality_counts.items():
|
||||
tk.Label(output_window, text=f"{modality}:").grid(row=row, column=0, sticky='w', padx=20, pady=2)
|
||||
tk.Label(output_window, text=f"{count}").grid(row=row, column=1, sticky='w', padx=5, pady=2)
|
||||
row += 1
|
||||
|
||||
# GUI setup
|
||||
# GUI
|
||||
root = tk.Tk()
|
||||
root.title("DICOM Discovery Analyzer")
|
||||
root.geometry("400x150")
|
||||
|
||||
frame = tk.Frame(root, padx=10, pady=10)
|
||||
frame.pack()
|
||||
frame = tk.Frame(root, padx=10, pady=20)
|
||||
frame.pack(expand=True)
|
||||
|
||||
ttk.Button(frame, text="Select and Analyze Output File", command=load_and_analyze_file).pack()
|
||||
tk.Button(frame, text="Select Input File and Analyze", command=analyze_and_save, width=30).pack(pady=10)
|
||||
|
||||
root.mainloop()
|
||||
|
||||
Reference in New Issue
Block a user